Hato, the 13th typhoon to hit China this year, made landfall at noon, bringing winds of up to 45 metres per second to the mouth of the Pearl River and heavy rain to nearby regions, the local meteorological bureau said.
When the typhoon swept past Macao, a wall brought down by strong winds killed a man.
Another person died after falling from the 11th floor of a building, and a third after being hit by a truck, Macao health authorities were quoted as saying by state-run Xinhua news agency.
Power transmission facilities suffered heavy loss, disrupting electricity supply to 1.91 million households.
About half of the households had power back by late today.
Alerts for landslides, flooding, and other geological disasters have been issued.
"Compared to other typhoons, Hato moved fast, quickly grew more powerful and caused massive amounts of rainfall," said Wu Zhifang, chief weather forecaster at Guangdong meteorological bureau.
Meteorologists had earlier warned of unusually high flooding as the typhoon came during high tides.
In one of the hardest-hit areas, 19 villages near the town of Guanghai, Taishan city, were flooded, according to local resident Xie Yongbin. Power was cut off.
However, no casualties have been reported as the evacuation started early.
In Zhuhai, trees and billboards have been blown down, but floodwater has begun to recede.
Classes and work were suspended in many cities. Several expressways were closed and train services halted.
At least six ships on the mouth of the Pearl River have reported emergencies. Maritime rescue workers saved 118 crew members, according to the Ministry of Transportation.
In Guangxi, more than 15,000 workers at the local power grid were put on standby while precautions have been taken to minimise the damage caused by potential flooding and landslides.
More than 11,860 fishing boats have been moored.
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