In a report detailing the incarceration of 18 Egyptians, the New York-based Committee to Protect Journalists said most were accused of affiliation with the now-outlawed Muslim Brotherhood of ousted Islamist President Mohammed Morsi.
It said the threat of imprisonment in Egypt is part of a stifling atmosphere in which authorities pressure media outlets to censor critical voices and issue gag orders on sensitive topics.
It said el-Sissi has invoked national security to trample on liberties.
"But CPJ research shows that the government of el-Sissi ... Has used the pretext of national security to crack down on human rights, including press freedom."
As army chief, el-Sissi overthrew Morsi in 2013 during massive protests against his rule, before winning a landslide election last year.
Since the overthrow, authorities have waged a massive crackdown on the Muslim Brotherhood and other opponents, killing hundreds, jailing thousands and sparking a backlash of attacks against security forces, mostly in the restive Sinai Peninsula. Activists say dozens more journalists have been detained.
Several stand accused of "spreading chaos," while others are charged with disseminating "false news" or anti-government messages.
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