The fighting broke out at a distribution site after some soldiers tried to steal food sacks meant for displaced people and other soldiers guarding the aid stopped them, said police Col. Isaq Hassan.
At least 20 people were injured. Some were in critical condition, a nurse at Baidoa's main hospital, Mohamed Ahmed, told The Associated Press.
Somalia is one of four countries singled out by the United Nations in a USD 4.4 billion aid appeal to avert catastrophic hunger and famine, along with Nigeria, South Sudan and Yemen.
Baidoa now hosts one of the largest populations of displaced people, with more than 142,000 recorded as of mid- May, according to the International Organisation for Migration. The majority of those displaced in Baidoa are children and teens.
"Every single person we have seen is a personal story of tremendous suffering. There is no way to describe it," a visibly shocked UN Secretary-General Antonio Guterres said during a visit in March to Baidoa, where he saw skeletal men, women and children in a cholera ward. The disease has been a problem with the shortage of clean water.
Al-Shabab last year became the deadliest Islamic extremist group in Africa, with more than 4,200 people killed in 2016.
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