The rebels of the Allied Democratic Forces, a partly Islamist armed group of Ugandan origin, are accused of a litany of human rights abuses and being involved with kidnappings and smuggling.
"Suspected ADF attacked Beni from the north overnight... Eight civilians were shot dead, a soldier was killed and a suspected ADF militant was also killed," the local civil society leader, Gilbert Kambale, told AFP.
"Workers from Beni town hall are currently transferring the bodies of the suspected ADF (member) and eight other bodies to a large vehicle," Rossy Mupenda, a motorcycle taxi driver who was assisting with the operation, told AFP.
Various rebel groups operate in the region around the town of Beni, an area plagued by violence fuelled by ethnic rivalry and disputes over the right to exploit local mining and forest resources.
The gruesome August slaying of 51 people in the town of Beni touched off mass street protests against the government of the Democratic Republic of Congo for failing to protect the population from the armed rebel groups that plague the region.
On Friday, US-based rights group Human Rights Watch criticised the government for failing to protect the people of the Beni region and called on authorities to develop "a new strategy to protect civilians" in the area.
In March, a report by the Congo Research Group at New York University claimed that soldiers from the regular army had also participated in some of the killings.
A wave of deadly clashes pitting police against demonstrators hit the country in late September, as the opposition demanded Kabila's resignation.
The US Treasury subsequently placed two of Kabila's top allies on its sanctions blacklist, tying both to rising political violence and human rights violations.
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