General Godefroid Niyombare, who launched the coup in the central African nation earlier in the week, told AFP by telephone that he wanted to give himself up, and said soldiers supporting the president were approaching him.
"We have decided to surrender," he said. "I hope they won't kill us."
It was not immediately clear if he was arrested or killed.
The coup leaders' spokesman, Venon Ndabaneze, was also speaking to AFP confirming that the putschists had decided to surrender when loyalist troops arrested him, deputy coup leader Cyrille Ndayirukiye and another senior figure among the mutineers.
AFP remained on the line as the leaders were detained.
The dramatic end to the coup attempt came shortly after the presidency announced that Nkurunziza -- who was abroad when the coup was declared -- had returned to the country.
He was in neighbouring Tanzania for regional talks Wednesday when Niyombare launched the coup, in a culmination of weeks of violent street protests against the president's bid to seek a third term.
The coup attempt had raised fears of a return to widespread violence in the impoverished country, which is still recovering from a 13-year civil war that ended in 2006 and left hundreds of thousands dead.
On Thursday, loyalist troops fought off two major attacks by rival soldiers in an intense battle for control over the strategically important state broadcaster.
The fight for RTNB, the state radio and television broadcaster, was seen as crucial to control the flow of information as Burundi's main private radio stations and the largest independent television channel were no longer broadcasting. The influential African Public Radio station was even set ablaze after being hit by a rocket.
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