The tightening of security ahead of the France-Nigeria and Algeria-Germany second round matches followed riots after the last two Algerian fixtures.
In Lyon, more than 500 officers were due to be on duty, more than for the annual New Year celebrations and the biggest police mobilisation in the city since its troubled suburbs were rocked by serious rioting in 2010.
Similar preparations have been made in Paris, Marseille, Bordeaux, Strasbourg and Lille, while the mayor of the Riviera city of Nice effectively banned Algerian fans from brandishing the country's flag.
"Since the start of the World Cup we have sadly seen intolerable behaviour that severely disrupts public peace," Estrosi added. He said the ban would remain in force until the end of the tournament.
Some celebrations of Algeria's historic qualification for the second round of the World Cup spilled over into violence last week with more than 70 people arrested for rioting or looting across France.
The incidents prompted far-right leader Marine Le Pen to call for dual nationality to be revoked on the ground that the fervent support for Algeria reflected a failure to integrate into French society.
Algerians make up France's largest immigrant group, with close to two million people able to trace their roots back to the former colony.
Many hold dual citizenship and attachment to Algeria appears as strong amongst the French-born younger generation as it is amongst older immigrants.
"We are asking everyone to stay calm while celebrating a victory," government minister Harlem Desir said today.
Desir slammed Le Pen's comments as an "attempt to play one off against the other," and said the trouble-makers were a minority and not representative of the community.
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