The orderly return of the 202 migrants aboard three chartered Turkish ferries stood in stark contrast to the journey many have taken over perilous seas in flimsy life jackets aboard crowded and leaky rubber dinghies.
Two boats left the Greek island of Lesbos at dawn, and another from the island of Chios, carrying mostly economic migrants from Pakistan and Afghanistan who Turkey will eventually deport to their home countries.
The first to be deported under the deal arrived at the Turkish Aegean resort of Dikili to a heavy security presence on the harbourside and media kept at a distance by metal barriers, according to AFP reporters at the scene.
Yorgos Kyritsis, Greece's migration spokesman, said the first wave contained citizens from Iran, Congo, Sri Lanka, Bangladesh, India, Ivory Coast and Somalia.
Only two were from Syria and they had requested to return for personal reasons, Kyritsis said.
The grim-faced deportees were boarded onto the boats by security guards from the EU's Frontex border agency wearing sanitary face masks.
In a heavily criticised swap deal, the EU has pledged to rehouse one Syrian in the bloc for every one deported from Greece, with numbers capped at 72,000.
And the EU kept its side of the pact with 32 asylum seekers from Syria flying into the German city of Hanover.
European leaders hope this will discourage migrants from risking the crossing that has claimed 366 lives this year alone and break up the lucrative racket that smuggled about one million migrants into Europe last year.
Amnesty International has accused Turkey of not being a safe country for refugees by forcibly returning Syrians back home to their war-torn countries -- a charge Ankara rejects.
"The returns today are in many ways symbolic," said Gauri Vangulik, Deputy Europe director for Amnesty International.
"They are the first starting point of what is to become really one of the most disastrous episodes in European asylum policy.
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