The National Security Council Act was pushed through parliament in December by the government of Prime Minister Najib Razak, who has faced calls to resign for more than a year over an huge alleged corruption scandal.
The legislation gives the government power to declare virtual martial law in areas deemed to be under "security threat".
Critics accused Najib and his government of enacting the law, and other tough recent legislation, to ward off political and legal challenges.
"The public perception in terms of the timing of the draconian law is that Najib wants the law in order to stay in office."
The legislation allows a National Security Council headed by the prime minister to essentially suspend civil liberties in designated "security areas", giving security forces sweeping powers of search, seizure and arrest.
Najib has defended the law as necessary to combat terrorism, but its passage came amid the ongoing furore over allegations that billions of dollars were stolen from a state investment fund he founded and oversaw.
Najib and 1MDB deny wrongdoing.
Authorities in several countries are investigating allegations that investment fund 1Malaysia Development Berhad, or 1MDB, was looted over several years.
Najib has stifled domestic pressure by cracking down on critics within his ruling party, scuttling domestic probes, and arresting whistleblowers and journalists.
The UN's human rights agency and other rights organisations have pilloried the National Security Council Act as a potentially frightening step backward.
"We are gravely concerned that... The act may encourage human rights violations," Laurent Meillan, acting head of the UN Human Rights Office for Southeast Asia, said in a statement last week.
The US move has heightened expectations of further anti-Najib protests in Malaysia, but there are concerns the security law could be used to prevent them.
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