Vladimir Golubev, a former employee of the country's top nuclear weapons research and development centre, is accused by the security services of disclosing state secrets after publishing an article about explosives in a Czech journal, his lawyer told AFP.
The article was based on a report he gave at an international conference in the Czech Republic in 2013.
Last summer the FSB security service, the successor to the Soviet-era KGB agency, raided the scientist's apartment in the central Russian city of Nizhny Novgorod and opened a criminal case against him, his lawyer Yevgeny Gubin told AFP.
"He contacted me yesterday," Gubin said, adding that the scientist's interests had been previously represented by a state-appointed lawyer. "I am now studying the case."
Golubev worked at the Russian Federal Nuclear Centre located some 500 kilometres southeast of Moscow between 1975 and 2013.
The centre designed the Soviet Union's first nuclear bomb and is considered to be the Russian equivalent of the United States' Los Alamos facility.
Golubev is the latest Russian scientist to be charged with disclosing state secrets or spying.
His lawyer said his prosecution appeared to reflect a "general trend."
"Spies are everywhere," he said, referring to what he described as the security service's apparent logic.
The Public Committee for Protection of Scientists pledged to oversee Golubev's case today.
"We already have some 20 people who have been jailed over nothing," a member of the committee, Yury Ryzhov, said on radio.
In 2004, Igor Sutyagin, a Russian arms control expert, was convicted of handing over classified information to a British company that Russia claimed was a CIA cover, and sentenced to 15 years in jail.
In 2010, Sutyagin was deported to Britain as part of a spy swap with the United States.
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