Amnesty said in its nearly 80-page report released yesterday that activists who called for reform in 2011 were subjected to ill-treatment and torture.
It said confessions made under duress were then used as evidence in "unfair" trials. The report included responses from the UAE government.
In its statement today, the UAE Foreign Ministry said those arrested were not peaceful activists but people aligned with the Muslim Brotherhood group who tried to topple the ruling system. It said defendants were given due process.
Included on that list is the Islamist al-Islah group, believed to have ties to the Brotherhood.
Nearly 70 defendants with alleged links to al-Islah were convicted in the UAE and given prison sentences ranging from seven to 15 years. They were accused of seeking to seize power.
The UAE, which does not have political parties and is governed by rulers who inherit their power, perceives the Brotherhood and its supporters as a threat due to their political activism.
In the statement carried on the official WAM news agency, the Foreign Ministry said the government acted to protect its national integrity.
Amnesty International said that beyond the UAE's public image of glitz and glamour is a "much uglier reality" for people who dare to speak out in favour of greater democracy or greater accountability from the country's rulers.
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