Donald Ray Morgan was taken into custody on August 2 upon his arrival from Frankfurt, according to documents filed in a federal court in Brooklyn.
A spokesperson for prosecutors said the 44-year-old ex-convict was arrested in connection with a North Carolina indictment and charged with "being a felon in possession of firearms."
Authorities also discovered that Morgan had tweeted his loyalty to the leader of the Islamic State using the alias Abu Omar al Amreeki.
The Federal Bureau of Investigation, however, said Morgan has not been charged with terrorism.
There is "no indication of anything with terrorism, the charges are for fire arms violation," an FBI spokesperson said.
Morgan had spent eight months in Lebanon, where his wife lives, the New York Daily News reported.
He is currently being transported to North Carolina, according to the prosecutor's office.
In mid June, Sunni Arab militants, led by jihadists of the Islamic State of Iraq and the Levant, which was later renamed the Islamic State (IS) and is sometimes referred to as ISIS, seized Iraq's second biggest city Mosul as government forces took flight.
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