The youths shouted slogans and pelted stones at security forces, who resorted to cane charge and firing of teargas shells to disperse the protesters, police said, adding that "the situation is under control now".
There was, however, no report of any injury to anyone.
The 21-km half marathon, organised to raise awareness about saving Srinagar's iconic Dal Lake, was flagged off in the morning from Kashmir University at Hazratbal. It was to pass through the banks of Dal Lake along Foreshore Road.
"Some people tried to misbehave with female participants. There were many complaints of eve-teasing and molestation which are condemnable," Waheed Para, PDP's youth wing president and political analyst to Chief Minister Mufti Mohammad Sayeed, said here.
Para said those who indulged in sloganeering and raising of Pakistani flag were also behind the alleged eve-teasing and molestation cases.
As many as 15 international athletes had confirmed their participation in the event for which more than 15,000 people had registered.
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