In a telephone conversation at Russia's behest, the two men "exchanged views on regional security matters, first and foremost, in the context of finding ways to settle the conflict in Syria", a statement posted to the Kremlin's website said.
They also discussed "building more effective international cooperation in the fight against the so-called Islamic State and other terrorist groups", it said.
A decades-long backer of the Damascus regime, Moscow has steadfastly supported President Bashar al-Assad throughout four-and-a-half years of war which have killed more than 240,000 people.
On Monday, Putin will address the General Assembly in New York to outline his plan for Syria, notably the idea of expanding a coalition, which would include Assad's army, to fight Islamic State.
He will also meet US President Barack Obama on the sidelines of the gathering, their first formal talk in two years.
Russia has lately boosted its military presence in Syria, deploying more troops and warplanes to an air base along with new arms deliveries to Assad's forces. Last week, the Syrian army used Russian drones against the jihadists for the first time.
Moscow's military build-up comes with Washington's own policy for fighting IS in Syria in increasing disarray.
The US has a USD 500-million programme to train and equip vetted moderates recruited from among the rebels fighting Assad, but it has faced repeated setbacks.
Washington and its allies have up until now insisted that Assad has no future in Syria, but there have been recent signs of a change, perhaps allowing him an interim role until a new government is formed.
"It is in theory possible that all those involved join the coalition if it receives the approval of the UN Security Council," Ilya Rogatchev, head of the Russian Foreign Ministry's Department for New Challenges and Threats, told AFP.
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