Bach rejected the "nuclear option" of ordering a complete ban on Russian athletes over accusations of widespread state-organised doping. Two swimmers could be told on Tuesday whether their demand to be allowed to compete has been successful.
In a strongly-worded speech to the IOC, Bach called for WADA to be subjected to a thorough review, laying bare a growing rift between Olympic chiefs and the body responsible for leading the global fight against doping.
"The IOC is calling for a more robust and efficient anti-doping system. This requires clear responsibilities, more transparency, more independence and better worldwide harmonisation."
A bombshell report by Canadian lawyer Richard McLaren for WADA released last month accused Russia of organising state-backed doping with the sports ministry using secret services to evade drug testers and cover-up positive tests stretching back years.
- No 'nuclear option' -
=======================
Bach and the IOC came under fire after resisting calls to ban Russia completely from Rio. The IOC ordered individul federations to decide which Russians should be banned.
Bach said the "nuclear option" of a blanket ban was unacceptable.
"The result is death and devastation. This is not what the Olympic movement stands for," Bach told delegates who voted overwhelming.
Members voted overwhelmingly in favor of a resolution backing the IOC's decision not to impose a blanket ban on Russia's athletes.
Several delegates blasted WADA.
Argentine IOC member Gerardo Werthein accused WADA of "grand-standing."
Israeli member Alex Gilady meanwhile added: "I think it is not the reputation of the IOC which must be restored, but the reputation of WADA."
Russia's representative, Alexander Zhukov, suggested foreign governments had put pressure on the IOC to ban Russia.
"We are witnessing direct interference of politics in sport; an attempt to influence decision making process for political means. The integrity of the Olympic family is all under attack," Zhukov said.
- Legal imbroglio -
===================
The feud between the IOC and WADA came as the legal imbroglio triggered by the Russian scandal continued to dog the build-up to the games.
The Court of Arbitration for Sport was expected to issue a ruling later Tuesday over whether Russian swimmers Vladimir Morozov and Nikita Lobintsev would be able to compete.
"I can confirm that Lobintsev and Morozov are being allowed to compete in the Games," Lobintsev's agent, Andrei Mitkov, told the Interfax news agency.
In a separate drugs controversy, British cyclist Lizzie Armitstead has been cleared to race in the Olympics after winning an appeal against an anti-doping rule violation.
Armitstead faced a four-year ban after UK Anti-Doping found she had missed three tests in a 12-month period.
But CAS ruled the procedures surrounding her first whereabouts failure in 2015 had not been followed correctly.
"I have always been and will always be a clean athlete and have been vocal in my anti-doping stance throughout my career," she said in a statement.
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