Border guards stormed the ship after Greenpeace activists scaled an oil platform owned by state energy giant Gazprom to protest against planned drilling on the Arctic shelf.
Special forces officers armed with guns locked up crew members on the Arctic Sunrise icebreaker ship after lowering themselves onto the deck with ropes from a helicopter.
"At this moment, the Arctic Sunrise ship is being taken to the port of Murmansk," Greenpeace said on Twitter today.
She said that the captain had been questioned but that a full investigation would take place when the ship reaches port.
Murmansk is 1,485 kilometres north of Moscow. Border guards said the rest of the ship's journey would take three days.
Russia's FSB security service, which controls the border guards, has accused the ship's captain of carrying out "unlawful activities."
Greenpeace said border guards on Wednesday had detained two activists who were attempting to scale Gazprom's Prirazlomnaya oil platform and took them on board their patrol boat. The border guards later returned the two activists from Finland and Switzerland to the Arctic Sunrise and locked them up with their crewmates, Greenpeace said.
Greenpeace said the Dutch-flagged Arctic Sunrise was in international waters at the time of the storm, in the southeastern part of the Barents Sea, which lies to the north of Norway and western Russia.
Greenpeace is campaigning against surveying of oil and gas fields on the Arctic shelf, arguing that any oil leak would be catastrophic in the pristine environment and impossible to bring under control.
But the prospect of more accessible energy riches as global warming gradually melts the sea ice is prompting rivalry between Russia, Norway and Canada to explore and exploit region.
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