Sisi has often warned that Islamist extremism presents a vital threat to the region, which he suggested lags in development and women's rights.
Not enough work, he added, has been done to confront the ideology of extremists who have roiled the region and are waging a bloody insurgency in Egypt's Sinai Peninsula.
"We are on a mission, during one of the most difficult periods not only for Egypt, but for Egypt and all Arab and Muslim states," Sisi said in the televised speech.
"If you found that the flaw was only in Egypt, we'd say OK. But I wonder, in how many of these 50 (Muslim) countries is this situation present?" he asked.
Early Islamic scholars, he said, confronted sayings and traditions wrongly attributed to the Muslim prophet Mohamed. Islamic law is partly based on Mohamed's sayings that are deemed authentic.
"We can perform the same role, but regarding other things," Sisi said, without elaborating.
"I fear that we have not until now found the real path to confronting fanaticism and extremism: look at the map of extremism in the world," he added.
The retired field marshal has since presented himself as an authority on the dangers of Islamist extremism, and found acceptance among Western countries as an ally in the war against the Islamic State group.
Egypt is battling an affiliate of the group in the Sinai Peninsula which has killed hundreds of soldiers and policemen and brought down a Russian passenger plane with 224 people on board.
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