The move came after the government asked the social network to remove the gay-friendly account that allegedly published cartoons containing pornographic material and riling many in the country - home to the world's largest Muslim population.
The Ministry of Information and Communication alleged in a statement that the account, run by a user known only as @Alpantuni, violated the Electronic Information and Transactions Law by distributing content that "breached decency", according to Efe news.
The Ministry thanked users for their complaints which "accelerated the process" against the handle.
The comic strips, which showed Muslim gay characters and criticized homophobia and religious fundamentalism in the country, were targeted by a large number of Instagram users, who tagged the Ministry in their comments.
But the Electronic Information and Transactions (EIT) law and the law against pornography have often been used in Indonesia to criminalize homosexuality and the LGBT community, according to non-profit Human Rights Watch.
In February 2018, the government blocked more than 200 mobile applications and websites with content related to homosexuality.
To "safeguard" moral norms on the Internet, the Ministry of Communication has also threatened to shut down other social networks and messaging apps in recent years apart from blocking hundreds of webpages and apps carrying content that promotes homosexuality.
Nearly 88 per cent of Indonesia's over 260 million people are Muslims and the majority of them are said to be moderates.
(This story has not been edited by Business Standard staff and is auto-generated from a syndicated feed.)