His comments come in the wake of frequent attacks by Chief Minister V Narayanasamy on the style of functioning of Bedi.
Narayanasamy had earlier stated that Bedi should act in "consultation and concurrence" of the elected ministry.
Last year, Bedi had even threatened to quit her post and leave the Union Territory over non-cooperation by officials.
On the Medical Council of India recently quashing admission of students to first year MBBS course in deemed universities and private medical colleges in the Union Territory, Raja said it was done due to irregularities in selection of the students.
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